Package index • pviem

All functions

compute_doses_ratio(): Compute doses ratio for imputation
compute_immunity() compute_immunity_by_type(): Estimate vaccine-derived immunity
compute_immunity_samples() compute_immunity_sample() summarize_immunity_samples(): Estimate vaccine-induced immunity levels from routine immunization data
config_pviem() experimental: Configure column mappings
dummy_birth_seasonality: Births seasonality dummy data
dummy_live_births deprecated: Dummy data for live births
dummy_monthly_ri_data: Monthly Routine Immunization (RI) dummy data
dummy_ri_data deprecated: Dummy Routine Immunization (RI) data
dummy_vs_info: Vaccination schedule dummy table
dummy_yearly_ri_data: Yearly Routine Immunization (RI) dummy data
efficacy_default: Default vaccine efficacy estimates data
fakeland: Fake country shapefile for illustrations
get_default_sample_pair(): Get the default sample pair for ratio computation
get_neighbors(): Get all administrative units neighbors
get_pviem_config(): Get current column mappings
handle_extra_doses(): Handle extra doses
impute_missing_doses(): Missing doses imputation
prep_dummy_efficacy: Preprocessed vaccine efficacy dummy data
prep_dummy_vs_info: Preprocessed vaccination schedule dummy table
prep_efficacy_default deprecated: Preprocessed vaccine efficacy dummy data
preprocess_efficacy(): Preprocess vaccine efficacy data
preprocess_vs_info(): Preprocess vaccination schedule
shift_doses() compute_shift_prop(): Shift doses to match birth cohort
validate_all_data() validate_vs_info() validate_efficacy() validate_ri_data() validate_live_births() validate_birth_seasonality() validate_sample_pair() validate_vax_imm_type() deprecated: Validate data required by the package
with_config() local_config(): Temporarily modify package setup